PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10182_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 271aa    MW: 29945.5 Da    PI: 6.6783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10182_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-2070119255
                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                           +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a+++++g
  cra_locus_10182_iso_2_len_1085_ver_3  70 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAALAYDEAALRFKG 119
                                           7********.**********94....45***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-3369128IPR001471AP2/ERF domain
SMARTSM003806.5E-3970133IPR001471AP2/ERF domain
PfamPF008478.4E-1470119IPR001471AP2/ERF domain
CDDcd000183.86E-3570128No hitNo description
PROSITE profilePS5103224.7570127IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2270128IPR016177DNA-binding domain
PRINTSPR003671.1E-117182IPR001471AP2/ERF domain
PRINTSPR003671.1E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
KVDNRPRHGK RALFHLEASS TTEDKSSQDS LSLPNSIHKN QQLVSDHHSS LLQVQDQAAA  60
GGSGGGAKRH YRGVRQRPWG KWAAEIRDPK KAARVWLGTF ETAEDAALAY DEAALRFKGS  120
KAKLNFPERV QGKTELHYYS DQSIRPTTAS SVRPNSSSNV LDVTNNADAA AAAAAGEQYL  180
YSGADQYNYY PHLLQYAQLL SSSDAEFPYF TSALYNNQQH STSQPILPQQ QDPCNFPSSQ  240
SQSQYGSSSC IPDFVDDYGK DFDPNTPNDH Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2869130163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086885.12e-60PREDICTED: ethylene-responsive transcription factor ERF113 isoform X2
RefseqXP_011086884.12e-60PREDICTED: ethylene-responsive transcription factor ERF113 isoform X1
SwissprotQ9LYU33e-43EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLQ2Q0A95e-57Q2Q0A9_CAPAN; Putative AP2/EREBP transcription factor
STRINGPOPTR_0003s16090.15e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165